Trans-meQTLs across different cancer types

In trans-meQTL analyses, we identified 965,050 trans-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

     

e.g., "BLCA"
e.g., "rs4975682"
e.g., "cg25599786"
e.g., "PDCD6"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
p-valule
Display
BLCA rs7932815 chr11:50338567 G/A cg15704280 chr7:45808275 SEPT13 -1.03 -24.66 -0.78 7.53E-81 Box Plot
BLCA rs7949584 chr11:50338535 A/G cg15704280 chr7:45808275 SEPT13 -1.03 -24.66 -0.78 7.53E-81 Box Plot
BLCA rs8048191 chr16:68724621 T/C cg04657470 chr2:198365150 HSPE1;HSPD1 1.1 25.22 0.79 3.71E-83 Box Plot
BLCA rs8048368 chr16:68724734 T/C cg04657470 chr2:198365150 HSPE1;HSPD1 1.1 25.49 0.79 2.78E-84 Box Plot
BLCA rs8051095 chr16:68722049 G/A cg04657470 chr2:198365150 HSPE1;HSPD1 1.09 25.47 0.79 3.26E-84 Box Plot
BLCA rs864314 chr6:66814830 G/A cg15611600 chr13:45563400 KIAA1704;NUFIP1 -1.07 -24.21 -0.78 5.17E-79 Box Plot
BLCA rs868149 chr3:125750857 C/A cg26321609 chr3:123680480 CCDC14 -1.18 -25.38 -0.79 7.81E-84 Box Plot
BLCA rs879385 chr3:125744073 T/C cg26321609 chr3:123680480 CCDC14 -1.13 -25.27 -0.79 2.24E-83 Box Plot
BLCA rs879386 chr3:125744147 C/T cg26321609 chr3:123680480 CCDC14 -1.13 -25.27 -0.79 2.24E-83 Box Plot
BLCA rs9294682 chr6:66795159 G/A cg15611600 chr13:45563400 KIAA1704;NUFIP1 -1.08 -24.74 -0.79 3.28E-81 Box Plot
BLCA rs9351542 chr6:66788571 A/G cg15611600 chr13:45563400 KIAA1704;NUFIP1 -1.08 -25.18 -0.79 5.38E-83 Box Plot
BLCA rs9354366 chr6:66788559 C/T cg15611600 chr13:45563400 KIAA1704;NUFIP1 -1.08 -25.18 -0.79 5.38E-83 Box Plot
BLCA rs9363522 chr6:66816642 C/T cg15611600 chr13:45563400 KIAA1704;NUFIP1 -1.07 -24.27 -0.78 2.93E-79 Box Plot
BLCA rs9590767 chr13:44069562 C/T cg19169023 chr15:41853346 TYRO3 -1.11 -24.12 -0.78 1.24E-78 Box Plot
BLCA rs9594962 chr13:44072803 A/T cg19169023 chr15:41853346 TYRO3 -1.11 -24.15 -0.78 9.13E-79 Box Plot